Tools

by Bioinformatics Unit - CNIO  ||  Terms of use  ||

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Preprocessing

Viewers

Clustering

Differential Gene Expression

Classification

Data Mining

Preprocessing

		Preprocess DNA array data files: log-transformation, replicate handling, missing value imputation, filtering and normalization. The resulting dataset can be sent to our local DNA array analysis tools and to the EPclust (@EBI).
		Knowledge Filtering. This tool queries a database with the list of gene identifiers of the expression pattern data file and allows to select patterns based on their clasification in the database.

Preprocessing

Viewers

Clustering

Differential Gene Expression

Classification

Data Mining

Viewers

		PlotCorr. Compares two samples.
		SotaTree. Viewer for Sota Trees.
		Tree. Viewer for Newick Trees.

Preprocessing

Viewers

Clustering

Differential Gene Expression

Classification

Data Mining

Unsupervised Clustering

		SOTA. Sotarray Server.
		Cluster. Hierarchical Clustering Server
		SOM. Self-Organizing Map Server
		SOM-Tree Server. It performs a Hierarchical Clustering on Self-Organizing Map result for Exploratory Analysis

Preprocessing

Viewers

Clustering

Differential Gene Expression

Classification

Data Mining

Differential Gene Expression

Pomelo Tool A suite for DNA array and Tissue array multiple testing, including comparisons of two or more groups (t-test and ANOVA), survival analysis (Cox model) and contingency tables (Fisher's exact test).

Preprocessing

Viewers

Clustering

Differential Gene Expression

Classification

Data Mining

Supervised Classification

		SVM
		SVM Predictions

Preprocessing

Viewers

Clustering

Differential Gene Expression

Classification

Data Mining

Data Mining

FatiGO (Data Mining with Gene Ontology)

Preprocessing

Viewers

Clustering

Differential Gene Expression

Classification

Data Mining

Send comments.   Last rev. Wednesday 07 May 2003