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Preprocessing Viewers Clustering Differential Gene Expression Classification Data Mining

Preprocessing
Preprocessor Logo Preprocess DNA array data files: log-transformation, replicate handling, missing value imputation, filtering and normalization. The resulting dataset can be sent to our local DNA array analysis tools and to the EPclust (@EBI).
Knowlegde Filtering Logo Knowledge Filtering. This tool queries a database with the list of gene identifiers of the expression pattern data file and allows to select patterns based on their clasification in the database.

Preprocessing Viewers Clustering Differential Gene Expression Classification Data Mining

Viewers
PlotCorr Logo PlotCorr. Compares two samples.
SotaTree Logo SotaTree. Viewer for Sota Trees.
TreeView Logo Tree. Viewer for Newick Trees.

Preprocessing Viewers Clustering Differential Gene Expression Classification Data Mining

Unsupervised Clustering
Sota Logo SOTA. Sotarray Server.
Hierarchical Clustering Logo Cluster. Hierarchical Clustering Server
SOM Logo SOM. Self-Organizing Map Server
SOM-Tree Logo SOM-Tree Server. It performs a Hierarchical Clustering on Self-Organizing Map result for Exploratory Analysis

Preprocessing Viewers Clustering Differential Gene Expression Classification Data Mining

Differential Gene Expression
Pomelo Logo Pomelo Tool A suite for DNA array and Tissue array multiple testing, including comparisons of two or more groups (t-test and ANOVA), survival analysis (Cox model) and contingency tables (Fisher's exact test).

Preprocessing Viewers Clustering Differential Gene Expression Classification Data Mining

Supervised Classification
SVM-Train Logo SVM
SVM-Predict Logo SVM Predictions

Preprocessing Viewers Clustering Differential Gene Expression Classification Data Mining

Data Mining
FatiGO Logo FatiGO (Data Mining with Gene Ontology)

Preprocessing Viewers Clustering Differential Gene Expression Classification Data Mining


Send comments.   Last rev. Wednesday 07 May 2003